To resolve,
You have to contact VFS @ https://visa.vfsglobal.com/usa/en/ind/contact-us
And specify the Application Number (Both VFS as well as Gov Website ) Name and Previous Passport number
Meanwhile you can track the status here Passport Seva at Indian Embassies and Consulates
For me untill VFS resolved the issue the Gov website was showing Passport printed and sent .
So i got passport within 2 day’s of Gov website updated status.